PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 71404
Common NameSELMODRAFT_71405, VND1-2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 156aa    MW: 18406.8 Da    PI: 8.6204
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
71404genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.35e-5631311129
    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102
            +ppGfrFhPtdeelv +yL kkv+++ ++l ++i+++d+yk+ePwdL++  + +a+++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k +l+g+
  71404   3 VPPGFRFHPTDEELVGYYLYKKVSSEAIDL-DIIRDIDLYKMEPWDLQEdcASSADQSEWYFFSHKDKKYPTGSRTNRATTAGFWKATGRDKAIHT-KFKLIGM 104
            69****************************.99**************95334444667*************************************9.899**** PP

    NAM 103 kktLvfykgrapkgektdWvmheyrle 129
            +ktLvfykgrap+g+ktdW+mheyrle
  71404 105 RKTLVFYKGRAPNGQKTDWIMHEYRLE 131
            *************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100558.7023155IPR003441NAC domain
SuperFamilySSF1019411.96E-593155IPR003441NAC domain
PfamPF023655.3E-304130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
SHVPPGFRFH PTDEELVGYY LYKKVSSEAI DLDIIRDIDL YKMEPWDLQE DCASSADQSE  60
WYFFSHKDKK YPTGSRTNRA TTAGFWKATG RDKAIHTKFK LIGMRKTLVF YKGRAPNGQK  120
TDWIMHEYRL EDEQSGSYPN FSQEEGWVVC RMFKKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-52215614169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002990784.11e-116hypothetical protein SELMODRAFT_71405, partial
SwissprotQ9FWX22e-86NAC7_ARATH; NAC domain-containing protein 7
TrEMBLD8T5C31e-116D8T5C3_SELML; Putative uncharacterized protein VND1-2 (Fragment)
STRINGEFJ080571e-116(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-79NAC 007
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]